PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00415
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 288aa    MW: 32598.8 Da    PI: 8.1892
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00415genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.64.5e-3232136198
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..SEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..sefel 92 
                 f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  ++ +l
  AA21G00415  32 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCiGDsgRDSRL 130
                 89****************************66677899*************************************************443432455666 PP

                 EEEEE- CS
          B3  93 vvkvfr 98 
                 ++ +++
  AA21G00415 131 FIDWRK 136
                 666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-4227145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-3029136IPR015300DNA-binding pseudobarrel domain
CDDcd100179.58E-2530132No hitNo description
PROSITE profilePS5086314.64932138IPR003340B3 DNA binding domain
PfamPF023623.5E-2932137IPR003340B3 DNA binding domain
SMARTSM010193.7E-2232138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MMTNLSLMRT EEDEEVEEKP FEAAVLEKEH MFDKVVTPSD VGKLNRLVIP KQHAERYFPL  60
DSSSNEKGLL LNFEDLTGKS WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDIVSFQRC  120
IGDSGRDSRL FIDWRKRPKI PDPNSITHFP FPRFYSFSNP TPSTSYNLYN NTYGFHQIPR  180
ELGYGYFVRS LERNIPPMVA VADPLVIESV PVMIHGRGQR VVETAVGKRR LRLFGVDMEC  240
GGGGGLMSNM EEESSSSGGS VPRGGGAKSG DQFSKKGKSS LSFDLDDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-482913711117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002862757.11e-132hypothetical protein ARALYDRAFT_497309
SwissprotO827991e-133NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLD7MWS01e-132D7MWS0_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.181__3__AT2G46870.11e-131(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-122B3 family protein